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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:singleCellTK.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings singleCellTK_2.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/singleCellTK.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘singleCellTK/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘singleCellTK’ version ‘2.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘singleCellTK’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.5Mb
  sub-directories of 1Mb or more:
    extdata   1.5Mb
    shiny     2.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
plotScDblFinderResults     40.232  0.863  41.166
plotDoubletFinderResults   32.018  0.185  32.231
runScDblFinder             28.052  0.435  28.539
runDoubletFinder           24.459  0.066  24.582
plotTSCANPseudotimeHeatmap 23.701  0.077  23.811
importExampleData          20.472  1.985  23.210
plotBatchCorrCompare       13.965  0.152  14.123
plotMarkerDiffExp          13.566  0.052  13.637
plotScdsHybridResults      12.060  0.099  12.170
plotBcdsResults            11.123  0.161  11.300
plotDecontXResults         10.629  0.143  10.790
plotEmptyDropsResults       9.965  0.045  10.030
runEmptyDrops               9.502  0.024   9.553
plotEmptyDropsScatter       9.425  0.028   9.468
plotDEGViolin               8.701  0.068   8.794
runDecontX                  8.722  0.026   8.760
plotCxdsResults             8.511  0.046   8.560
plotUMAP                    7.732  0.043   7.782
findMarkerDiffExp           7.580  0.062   7.650
plotDEGRegression           7.567  0.048   7.624
detectCellOutlier           7.340  0.117   7.477
plotTSCANPseudotimeGenes    7.156  0.038   7.205
findMarkerTopTable          6.864  0.041   6.912
convertSCEToSeurat          6.273  0.211   6.492
plotDEGHeatmap              6.247  0.071   6.325
plotClusterPseudo           6.242  0.042   6.291
plotTSCANDEgenes            5.557  0.041   5.603
runSeuratSCTransform        4.996  0.125   5.136
runTSCANClusterDEAnalysis   4.995  0.027   5.028
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.15-bioc/meat/singleCellTK.Rcheck/00check.log’
for details.