############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sincell ### ############################################################################## ############################################################################## * checking for file ‘sincell/DESCRIPTION’ ... OK * preparing ‘sincell’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘sincell-vignette.Rnw’ using knitr Loading required package: igraph Attaching package: 'igraph' The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union Loading required package: Matrix Loading required package: Biobase Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:igraph': normalize, path, union The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: ggplot2 Loading required package: VGAM Loading required package: stats4 Loading required package: splines Loading required package: DDRTree Loading required package: irlba Quitting from lines 589-628 (sincell-vignette.Rnw) Error: processing vignette 'sincell-vignette.Rnw' failed with diagnostics: At core/layout/kamada_kawai.c:135 : Weights must be positive for Kamada-Kawai layout. Invalid value --- failed re-building ‘sincell-vignette.Rnw’ SUMMARY: processing the following file failed: ‘sincell-vignette.Rnw’ Error: Vignette re-building failed. Execution halted