############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf sesame.buildbin-libdir && mkdir sesame.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=sesame.buildbin-libdir sesame_1.13.36.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'sesame' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sesame' finding HTML links ... done BetaValueToMValue html DML html DMR html KYCG_annoProbes html KYCG_buildGeneDBs html KYCG_getDBs html KYCG_listDBGroups html KYCG_plotBar html KYCG_plotDot html KYCG_plotEnrichAll html KYCG_plotLollipop html KYCG_plotMeta html KYCG_plotMetaEnrichment html KYCG_plotPointRange html KYCG_plotVolcano html KYCG_plotWaterfall html MValueToBetaValue html SDFcollapseToPfx html SigDF html addMask html aggregateTestEnrichments html assemble_plots html binSignals html bisConversionControl html checkLevels html chipAddressToSignal html cnSegmentation html compareDatbaseSetOverlap html compareMouseStrainReference html compareMouseTissueReference html controls html createDBNetwork html createUCSCtrack html dataFrame2sesameQC html dbStats html deidentify html detectionIB html detectionPnegEcdf html detectionPoobEcdf html detectionPoobEcdf2 html diffRefSet html dmContrasts html dyeBiasCorr html dyeBiasCorrMostBalanced html dyeBiasCorrTypeINorm html dyeBiasL html estimateCellComposition html estimateLeukocyte html formatVCF html getAFTypeIbySumAlleles html getAFs html getBetas html getBinCoordinates html getRefSet html getSexInfo html inferEthnicity html inferInfiniumIChannel html inferSex html inferSexKaryotypes html inferSpecies html inferStrain html inferTissue html initFileSet html listAvailableMasks html mapFileSet html mapToMammal40 html matchDesign html meanIntensity html medianTotalIntensity html negControls html neob html noMasked html noob html normControls html openSesame html openSesameToFile html parseGEOsignalMU html predictAgeHorvath353 html predictAgeSkinBlood html predictMouseAgeInMonth html prefixMask html prefixMaskButC html prefixMaskButCG html prepSesame html prepSesameList html print.DMLSummary html print.fileSet html probeID_designType html probeSuccessRate html qualityMask html reIdentify html readFileSet html readIDATpair html resetMask html scrub html scrubSoft html sdfPlatform html sdf_read_table html sdf_write_table html searchIDATprefixes html segmentBins html sesame-package html sesameAnno_download html sesameAnno_get html sesameAnno_getManifestDF html sesameData_getAnno html sesameQC-class html sesameQC_calcStats html sesameQC_getStats html sesameQC_plotBar html sesameQC_plotBetaByDesign html sesameQC_plotHeatSNPs html sesameQC_plotIntensVsBetas html sesameQC_plotRedGrnQQ html sesameQC_rankStats html setMask html signalMU html sliceFileSet html summaryExtractTest html testEnrichment html testEnrichmentFisher html testEnrichmentGSEA html testEnrichmentSpearman html totalIntensities html twoCompsEst2 html updateSigDF html visualizeGene html visualizeProbes html visualizeRegion html visualizeSegments html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'sesame' as sesame_1.13.36.zip * DONE (sesame)