############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL seqsetvis ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'seqsetvis' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'seqsetvis' finding HTML links ... done Bcell_peaks html CTCF_in_10a_bigWig_urls html CTCF_in_10a_data html CTCF_in_10a_narrowPeak_grs html CTCF_in_10a_narrowPeak_urls html CTCF_in_10a_overlaps_gr html CTCF_in_10a_profiles_dt html CTCF_in_10a_profiles_gr html add_cluster_annotation html append_ynorm html applySpline html assemble_heatmap_cluster_bars html calc_norm_factors html centerAtMax html centerFixedSizeGRanges html centerGRangesAtMax html chromHMM_demo_bw_states_gr html chromHMM_demo_chain_url html chromHMM_demo_data html chromHMM_demo_overlaps_gr html chromHMM_demo_segmentation_url html chromHMM_demo_state_colors html chromHMM_demo_state_total_widths html clusteringKmeans html clusteringKmeansNestedHclust html col2hex html collapse_gr html convert_collapsed_coord html crossCorrByRle html dot-expand_cigar_dt html dot-expand_cigar_dt_recursive html dot-rm_dupes html dot-rm_dupesPE html easyLoad_FUN html easyLoad_IDRmerged html easyLoad_bed html easyLoad_broadPeak html easyLoad_narrowPeak html easyLoad_seacr html expandCigar html fetchBam html fragLen_calcStranded html fragLen_fromMacs2Xls html getReadLength html ggellipse html harmonize_seqlengths html make_clustering_matrix html merge_clusters html prepare_fetch_GRanges html prepare_fetch_GRanges_names html prepare_fetch_GRanges_width html quantileGRangesWidth html reorder_clusters_hclust html reorder_clusters_manual html reorder_clusters_stepdown html reverse_clusters html safeBrew html seqsetvis-package html set_list2memb html shift_anchor html split_cluster html ssvConsensusIntervalSets html ssvFactorizeMembTable html ssvFeatureBars html ssvFeatureBinaryHeatmap html ssvFeatureEuler html ssvFeaturePie html ssvFeatureUpset html ssvFeatureVenn html ssvFetchBam html ssvFetchBam.single html ssvFetchBamPE html ssvFetchBamPE.single html ssvFetchBigwig html ssvFetchBigwig.single html ssvFetchGRanges html ssvFetchSignal html ssvMakeMembTable-methods html ssvOverlapIntervalSets html ssvSignalBandedQuantiles html ssvSignalClustering html ssvSignalHeatmap.ClusterBars html ssvSignalHeatmap html ssvSignalLineplot html ssvSignalLineplotAgg html ssvSignalScatterplot html ssv_mclapply html test_peaks html viewGRangesWinSample_dt html viewGRangesWinSummary_dt html within_clust_sort html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seqsetvis) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'segmenter' is missing or broken done