############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf seqCNA.buildbin-libdir && mkdir seqCNA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=seqCNA.buildbin-libdir seqCNA_1.41.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'seqCNA' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c seqCNA.cpp -o seqCNA.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o seqCNA.dll tmp.def seqCNA.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/seqCNA.buildbin-libdir/00LOCK-seqCNA/00new/seqCNA/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'seqCNA' finding HTML links ... done SeqCNAInfo-class html applyFilters html applyThresholds html plotCNProfile html readSeqsumm html runGLAD html runSeqnorm html runSeqsumm html seqCNA-package html seqsumm_HCC1143 html writeCNProfile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'seqCNA' as seqCNA_1.41.0.zip * DONE (seqCNA)