############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf segmentSeq.buildbin-libdir && mkdir segmentSeq.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=segmentSeq.buildbin-libdir segmentSeq_2.29.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'segmentSeq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'segmentSeq' finding HTML links ... done SL html alignmentClass-class html alignmentData-class html alignmentMeth-class html averageMethylationRegions html finding level-2 HTML links ... done classifySeg html findChunks html getCounts html getOverlaps html givenExpression html hSL html heuristicSeg html lociData-class html lociLikelihoods html mergeMethSegs html methData-class html normaliseNC html plotGenome html plotMeth html plotMethDistribution html processAD html readMethods html readMeths html segClass-class html segData-class html segMeth-class html segmentSeq-package html selectLoci html summariseLoci html thresholdFinder html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'segmentSeq' as segmentSeq_2.29.1.zip * DONE (segmentSeq)