############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL scater ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'scater' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scater' finding HTML links ... done SCESet html accessors html finding level-2 HTML links ... done annotateBMFeatures html bootstraps html defunct html getExplanatoryPCs html getVarianceExplained html ggsce html multiplot html nexprs html plotColData html plotDots html plotExplanatoryPCs html plotExplanatoryVariables html plotExpression html plotGroupedHeatmap html plotHeatmap html plotHighestExprs html plotPlatePosition html plotRLE html plotReducedDim html plotRowData html plotScater html plot_reddim html reexports html retrieveCellInfo html retrieveFeatureInfo html runColDataPCA html runMDS html runMultiUMAP html runNMF html runPCA html runTSNE html runUMAP html scater-pkg html scater-plot-args html toSingleCellExperiment html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scater) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'tilingArray' is missing or broken done