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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL scGPS
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'scGPS' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c dist_mat_cpp.cpp -o dist_mat_cpp.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c dist_parallel_cpp.cpp -o dist_parallel_cpp.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c utils_rcpp.cpp -o utils_rcpp.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o scGPS.dll tmp.def RcppExports.o dist_mat_cpp.o dist_parallel_cpp.o utils_rcpp.o -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-scGPS/00new/scGPS/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scGPS'
    finding HTML links ... done
    CORE_bagging                            html  
    finding level-2 HTML links ... done

    CORE_clustering                         html  
    CORE_subcluster                         html  
    PCA                                     html  
    PrinComp_cpp                            html  
    add_import                              html  
    annotate_clusters                       html  
    bootstrap_parallel                      html  
    bootstrap_prediction                    html  
    calcDist                                html  
    calcDistArma                            html  
    clustering                              html  
    clustering_bagging                      html  
    day_2_cardio_cell_sample                html  
    day_5_cardio_cell_sample                html  
    distvec                                 html  
    find_markers                            html  
    find_optimal_stability                  html  
    find_stability                          html  
    mean_cpp                                html  
    new_scGPS_object                        html  
    new_summarized_scGPS_object             html  
    plot_CORE                               html  
    plot_optimal_CORE                       html  
    plot_reduced                            html  
    predicting                              html  
    rand_index                              html  
    rcpp_Eucl_distance_NotPar               html  
    rcpp_parallel_distance                  html  
    reformat_LASSO                          html  
    sub_clustering                          html  
    subset_cpp                              html  
    summary_accuracy                        html  
    summary_deviance                        html  
    summary_prediction_lasso                html  
    summary_prediction_lda                  html  
    tSNE                                    html  
    top_var                                 html  
    tp_cpp                                  html  
    training                                html  
    training_gene_sample                    html  
    var_cpp                                 html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scGPS)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'zinbwave' is missing or broken
 done