############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf sangeranalyseR.buildbin-libdir && mkdir sangeranalyseR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=sangeranalyseR.buildbin-libdir sangeranalyseR_1.5.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'sangeranalyseR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to '==' ** help *** installing help indices converting help for package 'sangeranalyseR' finding HTML links ... done ChromatogramParam-class html MakeBaseCalls-methods html ObjectResults-class html QualityReport-class-qualityBasePlot html QualityReport-class-updateQualityParam html QualityReport-class html SangerAlignment-class-generateReportSA html SangerAlignment-class-launchAppSA html SangerAlignment-class-updateQualityParam html SangerAlignment-class-writeFastaSA html SangerAlignment-class html SangerAlignment html SangerContig-class-generateReportSC html SangerContig-class-launchAppSC html SangerContig-class-readTable html SangerContig-class-updateQualityParam html SangerContig-class-writeFastaSC html SangerContig-class html SangerContig html SangerRead-class-MakeBaseCalls html SangerRead-class-generateReportSR html SangerRead-class-qualityBasePlot html SangerRead-class-readTable html SangerRead-class-updateQualityParam html SangerRead-class-writeFastaSR html SangerRead-class html SangerRead html generateReport html generateReportSA-methods html generateReportSC-methods html generateReportSR-methods html launchApp html launchAppSA-methods html launchAppSC-methods html qualityBasePlot-methods html qualityReportData html readTable-methods html sangerAlignmentData html sangerContigData html sangerReadFData html sangeranalyseR html updateQualityParam-methods html writeFasta html writeFastaSA-methods html writeFastaSC-methods html writeFastaSR-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'sangeranalyseR' as sangeranalyseR_1.5.1.zip * DONE (sangeranalyseR)