############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL roar ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'roar' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'roar' finding HTML links ... done RoarDataset-class html finding level-2 HTML links ... done RoarDataset-constructor html RoarDatasetFromFiles-constructor html RoarDatasetMultipleAPA-class html RoarDatasetMultipleAPA-constructor html RoarDatasetMultipleAPAFromFiles-constructor html checkStep-method html combineFisherMethod-method html computePairedPvals-method html computePvals-method html computeRoars-method html cores-method html countPrePost-method html countResults-method html fpkmResults-method html getFisher-method html meanAcrossAssays-method html pvalueCorrectFilter-method html pvalueFilter-method html roar-package html standardFilter-method html totalResults-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roar) Making 'packages.html' ... done