Back to Multiple platform build/check report for BioC 3.15
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2022-10-19 13:22:09 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for rhdf5 on palomino3


To the developers/maintainers of the rhdf5 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1642/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rhdf5 2.40.0  (landing page)
Mike Smith
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/rhdf5
git_branch: RELEASE_3_15
git_last_commit: fb6c15a
git_last_commit_date: 2022-04-26 11:10:06 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rhdf5
Version: 2.40.0
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL rhdf5
StartedAt: 2022-10-18 15:44:49 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 15:45:45 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 56.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL rhdf5
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'rhdf5' ...
** using staged installation
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5.c -o H5.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5A.c -o H5A.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5D.c -o H5D.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5E.c -o H5E.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5F.c -o H5F.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5G.c -o H5G.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5I.c -o H5I.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5L.c -o H5L.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5O.c -o H5O.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5P.c -o H5P.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5R.c -o H5R.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S.c -o H5S.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S_extras.c -o H5S_extras.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5T.c -o H5T.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5Z.c -o H5Z.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5constants.c -o H5constants.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c HandleList.cpp -o HandleList.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c HandleListWrap.c -o HandleListWrap.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c bit64conversion.c -o bit64conversion.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c external_filters.c -o external_filters.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5dump.c -o h5dump.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5ls.c -o h5ls.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5testLock.c -o h5testLock.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5writeDataFrame.c -o h5writeDataFrame.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c printdatatype.c -o printdatatype.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c utils.c -o utils.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c wrap.c -o wrap.o
g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5R.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LF:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-rhdf5/00new/rhdf5/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5)