############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r rfPred -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rfPred ### ############################################################################## ############################################################################## * checking for file 'rfPred/DESCRIPTION' ... OK * preparing 'rfPred': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'vignette.Rnw' using Sweave Loading required package: Rsamtools Loading required package: GenomeInfoDb Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Attaching package: 'IRanges' The following object is masked from 'package:grDevices': windows Loading required package: GenomicRanges Loading required package: Biostrings Loading required package: XVector Attaching package: 'Biostrings' The following object is masked from 'package:base': strsplit Loading required package: data.table Attaching package: 'data.table' The following object is masked from 'package:GenomicRanges': shift The following object is masked from 'package:IRanges': shift The following objects are masked from 'package:S4Vectors': first, second Loading required package: parallel [E::hts_open_format] Failed to open file http://www.sbim.fr/rfPred/all_chr_rfPred.txtz Error: processing vignette 'vignette.Rnw' failed with diagnostics: chunk 4 Error : scanTabix: failed to open file: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz path: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz index: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz.tbi --- failed re-building 'vignette.Rnw' SUMMARY: processing the following file failed: 'vignette.Rnw' Error: Vignette re-building failed. Execution halted