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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL proFIA
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'proFIA' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c UtilFunc.c -o UtilFunc.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c fastMatchPpm.c -o fastMatchPpm.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-proFIA/00new/proFIA/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'proFIA'
    finding HTML links ... done
    acquisitionDirectory                    html  
    analyzeAcquisitionFIA                   html  
    determiningInjectionZone                html  
    determiningSizePeak.Geom                html  
    estimateNoiseMS                         html  
    exportDataMatrix-proFIAset-method       html  
    exportExpressionSet-proFIAset-method    html  
    exportPeakTable-proFIAset-method        html  
    exportSampleMetadata-proFIAset-method   html  
    exportVariableMetadata-proFIAset-method
                                            html  
    findBandsFIA                            html  
    findFIASignal                           html  
    findMzGroup-proFIAset-method            html  
    getInjectionPeak                        html  
    group.FIA-proFIAset-method              html  
    impute.FIA-proFIAset-method             html  
    impute.KNN_TN-proFIAset-method          html  
    impute.randomForest-proFIAset-method    html  
    makeDataMatrix-proFIAset-method         html  
    noiseEstimation-class                   html  
    peaksGroup-proFIAset-method             html  
    plot                                    html  
    plotFlowgrams-proFIAset-method          html  
    plotNoise                               html  
    plotRaw-proFIAset-method                html  
    plotSamplePeaks-proFIAset-method        html  
    proFIA-package                          html  
    proFIAset-class                         html  
    proFIAset                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (proFIA)
Making 'packages.html' ... done