############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=proFIA.buildbin-libdir proFIA_1.21.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'proFIA' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c UtilFunc.c -o UtilFunc.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c fastMatchPpm.c -o fastMatchPpm.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/proFIA.buildbin-libdir/00LOCK-proFIA/00new/proFIA/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'proFIA' finding HTML links ... done acquisitionDirectory html analyzeAcquisitionFIA html determiningInjectionZone html determiningSizePeak.Geom html estimateNoiseMS html exportDataMatrix-proFIAset-method html exportExpressionSet-proFIAset-method html exportPeakTable-proFIAset-method html exportSampleMetadata-proFIAset-method html exportVariableMetadata-proFIAset-method html findBandsFIA html findFIASignal html findMzGroup-proFIAset-method html getInjectionPeak html group.FIA-proFIAset-method html impute.FIA-proFIAset-method html impute.KNN_TN-proFIAset-method html impute.randomForest-proFIAset-method html makeDataMatrix-proFIAset-method html noiseEstimation-class html peaksGroup-proFIAset-method html plot html plotFlowgrams-proFIAset-method html plotNoise html plotRaw-proFIAset-method html plotSamplePeaks-proFIAset-method html proFIA-package html proFIAset-class html proFIAset html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'proFIA' as proFIA_1.21.0.zip * DONE (proFIA)