############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL proBatch ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'proBatch' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'proBatch' finding HTML links ... done calculate_PVCA html calculate_feature_CV html calculate_peptide_corr_distr html calculate_sample_corr_distr html check_sample_consistency html color_list_to_df html correct_batch_effects html create_peptide_annotation html date_to_sample_order html dates_to_posix html define_sample_order html example_peptide_annotation html example_proteome html example_proteome_matrix html example_sample_annotation html feature_level_diagnostics html fit_nonlinear html generate_colors_for_numeric html long_to_matrix html matrix_to_long html merge_rare_levels html normalize html plot_CV_distr html plot_CV_distr.df html plot_PCA html plot_PVCA html plot_PVCA.df html plot_corr_matrix html plot_heatmap_diagnostic html plot_heatmap_generic html plot_hierarchical_clustering html plot_peptide_corr_distribution html plot_protein_corrplot html plot_sample_corr_distribution html plot_sample_corr_heatmap html plot_sample_mean_or_boxplot html plot_split_violin_with_boxplot html prepare_PVCA_df html proBatch html sample_annotation_to_colors html transform_raw_data html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (proBatch) Making 'packages.html' ... done