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### Running command:
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###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:proBatch.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings proBatch_1.12.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/proBatch.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘proBatch/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘proBatch’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘proBatch’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘proBatch-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_protein_corrplot
> ### Title: Peptide correlation matrix (heatmap)
> ### Aliases: plot_protein_corrplot
> 
> ### ** Examples
> 
> protein_corrplot_plot <- plot_protein_corrplot(example_proteome_matrix, 
+ protein_name = 'Haao', peptide_annotation = example_peptide_annotation, 
+ protein_col = 'Gene')
Warning in plot_corr_matrix(corr_matrix, annotation = peptide_annotation,  :
  color_list for annotation (cols & rows) not defined, inferring automatically.
            Numeric/factor columns are guessed, for more controlled color mapping use 
            sample_annotation_to_colors()
Warning in sample_annotation_to_colors(sample_annotation = annotation, sample_id_col = annotation_id_col,  :
  The following columns will not be mapped to colors: Gene if these have to be mapped, please assign 
                    them to factor, date or numeric
Warning in sample_annotation_to_colors(sample_annotation = annotation, sample_id_col = annotation_id_col,  :
  numeric columns not specified, 
            extracting numeric columns from factors
converting columns to corresponding classes 
          (factor, numeric)
> 
> protein_corrplot_plot <- plot_protein_corrplot(example_proteome_matrix, 
+  protein_name = c('Haao', 'Dhtkd1'), 
+  peptide_annotation = example_peptide_annotation,
+  protein_col = 'Gene', factors_to_plot = 'Gene')
Warning in plot_corr_matrix(corr_matrix, annotation = peptide_annotation,  :
  color_list for annotation (cols & rows) not defined, inferring automatically.
            Numeric/factor columns are guessed, for more controlled color mapping use 
            sample_annotation_to_colors()
Warning in sample_annotation_to_colors(sample_annotation = annotation, sample_id_col = annotation_id_col,  :
  The following columns will not be mapped to colors: ProteinName if these have to be mapped, please assign 
                    them to factor, date or numeric
Warning in sample_annotation_to_colors(sample_annotation = annotation, sample_id_col = annotation_id_col,  :
  numeric columns not specified, 
            extracting numeric columns from factors
converting columns to corresponding classes 
          (factor, numeric)
Error in if (is.na(main)) { : the condition has length > 1
Calls: plot_protein_corrplot ... plot_heatmap_generic -> pheatmap -> heatmap_motor -> lo
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.15-bioc/meat/proBatch.Rcheck/00check.log’
for details.