############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL plotgardener ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'plotgardener' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c checkRow.cpp -o checkRow.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c rebinBigwig.cpp -o rebinBigwig.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plotgardener.dll tmp.def RcppExports.o checkRow.o rebinBigwig.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-plotgardener/00new/plotgardener/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plotgardener' finding HTML links ... done annoDomains html annoGenomeLabel html annoHeatmapLegend html annoHighlight html annoPixels html annoSegments html annoText html annoXaxis html annoYaxis html annoZoomLines html assembly html c html colorby html defaultPackages html genomes html mapColors html pageCreate html pageGuideHide html pageGuideHorizontal html pageGuideShow html pageGuideVertical html pagePlotPlace html pagePlotRemove html pgParams html plotCircle html plotGG html plotGenes html plotGenomeLabel html plotHicRectangle html plotHicSquare html plotHicTriangle html plotIdeogram html plotLegend html plotManhattan html plotPairs html plotPairsArches html plotPolygon html plotRanges html plotRaster html plotRect html plotSegments html plotSignal html plotText html plotTranscripts html plotgardener html readBigwig html readHic html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotgardener) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'RUVSeq' is missing or broken done