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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL phenoTest
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'phenoTest' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phenoTest'
    finding HTML links ... done
    ClusterPhenoTest                        html  
    ExpressionPhenoTest                     html  
    barplotSignatures-methods               html  
    barplotSignifSignatures-methods         html  
    epheno-class                            html  
    finding level-2 HTML links ... done

    epheno                                  html  
    epheno2html                             html  
    ephenoGetters                           html  
    eset                                    html  
    eset.genelevel                          html  
    eset2genelevel                          html  
    export2CSV-methods                      html  
    export2CSV                              html  
    findCopyNumber                          html  
    genesInArea                             html  
    getEsPositions                          html  
    getGseaSignatures                       html  
    getVars2test-methods                    html  
    getVars2test                            html  
    gsea                                    html  
    gsea.subset                             html  
    gsea2html                               html  
    gseaData-class                          html  
    gseaSignatures-class                    html  
    gseaSignatures-methods                  html  
    gseaSignatures                          html  
    gseaSignaturesSign-class                html  
    gseaSignaturesVar-class                 html  
    gseaSignificance                        html  
    gseaSignificanceSign-class              html  
    gseaSignificanceVar-class               html  
    heatmapPhenoTest-methods                html  
    heatmapPhenoTest                        html  
    pAdjust-methods                         html  
    pAdjust                                 html  
    pca                                     html  
    phenoTest-package                       html  
    plot.gsea                               html  
    plot.gseaSignatures                     html  
    plots4epheno                            html  
    show-methods                            html  
    smoothCoxph                             html  
    summary.gsea                            html  
    summary.gseaSignificance                html  
    write.html                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phenoTest)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'InterCellar' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'TADCompare' is missing or broken
 done