##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.11.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'pathwayPCA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'pathwayPCA'
    finding HTML links ... done
    AESPCA_pVals                            html  
    CheckAssay                              html  
    CheckPwyColl                            html  
    CheckSampleIDs                          html  
    Contains                                html  
    ControlFDR                              html  
    CreateOmics                             html  
    CreateOmicsPathway                      html  
    CreatePathwayCollection                 html  
    ExtractAESPCs                           html  
    GumbelMixpValues                        html  
    IntersectOmicsPwyCollct                 html  
    JoinPhenoAssay                          html  
    LoadOntoPCs                             html  
    OmicsCateg-class                        html  
    OmicsPathway-class                      html  
    OmicsReg-class                          html  
    OmicsSurv-class                         html  
    OptimGumbelMixParams                    html  
    PathwaytValues                          html  
    PermTestCateg                           html  
    PermTestReg                             html  
    PermTestSurv                            html  
    SE2Tidy                                 html  
    SubsetPathwayCollection                 html  
    SubsetPathwayData                       html  
    SuperPCA_pVals                          html  
    TabulatepValues                         html  
    TransposeAssay                          html  
    ValidOmicsSurv                          html  
    WhichPathways                           html  
    aespca                                  html  
    colonSurv_df                            html  
    colon_pathwayCollection                 html  
    coxTrain_fun                            html  
    getPathPCLs                             html  
    getPathpVals                            html  
    get_set_OmicsPathway                    html  
    get_set_OmicsRegCateg                   html  
    get_set_OmicsSurv                       html  
    glmTrain_fun                            html  
    lars.lsa                                html  
    mysvd                                   html  
    normalize                               html  
    olsTrain_fun                            html  
    pathwayPCA-package                      html  
    pathway_tControl                        html  
    pathway_tScores                         html  
    permuteSamps                            html  
    print.pathwayCollection                 html  
    read_gmt                                html  
    show-OmicsPathway-method                html  
    superpc.st                              html  
    superpc.train                           html  
    wikipwsHS_Entrez_pathwayCollection      html  
    wikipwsHS_Symbol_pathwayCollection      html  
    write_gmt                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'pathwayPCA' as pathwayPCA_1.11.1.zip
* DONE (pathwayPCA)