############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL openPrimeR ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'openPrimeR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'openPrimeR' finding HTML links ... done AnalysisStats html Data html Input html Output html Plots html PrimerDesign html PrimerEval html Primers-method html Scoring html Settings html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-openPrimeR/00new/openPrimeR/help/Settings.html Templates-method html TemplatesFunctions html check_cvg_constraints html create_report-Primers-Templates-method html create_report-list-list-method html filterLimits-methods html filters-methods html get_cvg_stats-Primers-method html get_cvg_stats-list-method html openPrimeR-package html plot_constraint-Primers-method html plot_constraint-list-method html plot_constraint_deviation-Primers-method html plot_constraint_deviation-list-method html plot_constraint_fulfillment-Primers-method html plot_constraint_fulfillment-list-method html plot_cvg_constraints-Primers-method html plot_cvg_constraints-list-method html plot_primer_binding_regions-Primers-Templates-method html plot_primer_binding_regions-list-list-method html plot_primer_cvg-Primers-Templates-method html plot_primer_cvg-list-list-method html plot_template_cvg-Primers-Templates-method html plot_template_cvg-list-list-method html runTutorial html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openPrimeR) Making 'packages.html' ... done