############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r motifbreakR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data motifbreakR ### ############################################################################## ############################################################################## * checking for file 'motifbreakR/DESCRIPTION' ... OK * preparing 'motifbreakR': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'motifbreakR-vignette.Rmd' using rmarkdown Loading required package: grid Loading required package: MotifDb Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Attaching package: 'IRanges' The following object is masked from 'package:grDevices': windows Loading required package: GenomicRanges Loading required package: GenomeInfoDb Loading required package: Biostrings Loading required package: XVector Attaching package: 'Biostrings' The following object is masked from 'package:grid': pattern The following object is masked from 'package:base': strsplit See system.file("LICENSE", package="MotifDb") for use restrictions. Loading required package: rtracklayer Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL : argument is of length zero Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL : argument is of length zero Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const Execution halted Execution halted Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL : argument is of length zero Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const Execution halted Quitting from lines 226-232 (motifbreakR-vignette.Rmd) Error: processing vignette 'motifbreakR-vignette.Rmd' failed with diagnostics: error reading from connection --- failed re-building 'motifbreakR-vignette.Rmd' Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL : argument is of length zero Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const Execution halted SUMMARY: processing the following file failed: 'motifbreakR-vignette.Rmd' Error: Vignette re-building failed. Execution halted Error in serialize(data, node$con) : error writing to connection Calls: ... .send_to -> -> sendData.SOCKnode -> serialize