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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL mosbi
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'mosbi' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c attr_graph.cpp -o attr_graph.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c attributeConnector.cpp -o attributeConnector.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c attribute_overlap.cpp -o attribute_overlap.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c bicluster_methods.cpp -o bicluster_methods.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c boost_graph.cpp -o boost_graph.o
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                               ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/graph_traits.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:24,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
                                 ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
                                                                 ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
                               ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
                      ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> & r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> && r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
                                      ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/function_template.hpp:13,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/detail/maybe_include.hpp:36,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/function3.hpp:11,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/graphviz.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/graphml.hpp:20,
                 from boost_graph.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c boost_write.cpp -o boost_write.o
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                               ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/graph_traits.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:24,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
                                 ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
                                                                 ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
                               ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
                      ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> & r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> && r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
                                      ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/function_template.hpp:13,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/detail/maybe_include.hpp:36,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/function3.hpp:11,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/graphviz.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/graphml.hpp:20,
                 from boost_write.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c distance_matrix.cpp -o distance_matrix.o
distance_matrix.cpp: In member function 'virtual void SimWorker::operator()(std::size_t, std::size_t)':
distance_matrix.cpp:244:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
   for(int i=begin;i<end;i++){
                   ~^~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include/RcppParallel/TinyThread.h:7,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include/RcppParallel.h:6,
                 from distance_matrix.cpp:2:
D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include/RcppParallel/Common.h: In instantiation of 'int RcppParallel::resolveValue(const char*, T, U) [with T = long long unsigned int; U = int]':
D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include/RcppParallel.h:57:28:   required from 'void RcppParallel::parallelReduce(std::size_t, std::size_t, Reducer&, std::size_t, int) [with Reducer = SimWorker; std::size_t = long long unsigned int]'
distance_matrix.cpp:278:43:   required from here
D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include/RcppParallel/Common.h:16:23: warning: comparison of integer expressions of different signedness: 'long long unsigned int' and 'int' [-Wsign-compare]
    if (requestedValue != defaultValue && requestedValue > 0)
        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c extractBF.cpp -o extractBF.o
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from extractBF.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function.hpp:30,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string.hpp:23,
                 from extractBF.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
                 from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
                 from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from extractBF.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
extractBF.cpp: In function 'Rcpp::S4 getBFCluster(Rcpp::String, int)':
extractBF.cpp:92:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for(int i=0; i<results.size();i++){
                  ~^~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c extractQUBIC2.cpp -o extractQUBIC2.o
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from extractQUBIC2.cpp:7:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function.hpp:30,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/algorithm/string.hpp:23,
                 from extractQUBIC2.cpp:7:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
                 from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
                 from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from extractQUBIC2.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c full_graph.cpp -o full_graph.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c misc.cpp -o misc.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c network_edge_strength.cpp -o network_edge_strength.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c sample_biclusters.cpp -o sample_biclusters.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c write_matrix.cpp -o write_matrix.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o mosbi.dll tmp.def RcppExports.o attr_graph.o attributeConnector.o attribute_overlap.o bicluster_methods.o boost_graph.o boost_write.o distance_matrix.o extractBF.o extractQUBIC2.o full_graph.o misc.o network_edge_strength.o sample_biclusters.o write_matrix.o -LD:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-mosbi/00new/mosbi/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mosbi'
    finding HTML links ... done
    NoBFBiclusters                          html  
    algohistogram                           html  
    apply_threshold-bicluster_net-method    html  
    apply_threshold-cooccurrence_net-method
                                            html  
    apply_threshold                         html  
    attr_overlap                            html  
    attributeConnector                      html  
    attribute_graph                         html  
    bicluster-class                         html  
    bicluster_heatmap-bicluster-matrix-method
                                            html  
    bicluster_heatmap                       html  
    bicluster_net-class                     html  
    bicluster_net_to_igraph-bicluster_net-method
                                            html  
    bicluster_net_to_igraph                 html  
    bicluster_network                       html  
    bicluster_to_matrix-matrix-bicluster-method
                                            html  
    bicluster_to_matrix                     html  
    check_names                             html  
    clean_bicluster_list                    html  
    colhistogram                            html  
    cooccurrence_net-class                  html  
    cooccurrence_net_to_igraph-cooccurrence_net-method
                                            html  
    cooccurrence_net_to_igraph              html  
    cpp_matrix_subsetting                   html  
    detect_elements                         html  
    dim-bicluster-method                    html  
    distance_matrix                         html  
    ensemble_biclusters                     html  
    feature_louvain_overlap                 html  
    feature_network                         html  
    filter_bicluster_size                   html  
    filter_biclusters                       html  
    filter_matrix                           html  
    filter_subsets                          html  
    full_graph                              html  
    getAkmbiclustClusters                   html  
    getBFCluster                            html  
    getBicAREbiclusters                     html  
    getBiclustClusters                      html  
    getBiclustpyClusters                    html  
    getFabiaClusters                        html  
    getIsaClusters                          html  
    getQUBIC2biclusters                     html  
    get_adjacency-bicluster_net-method      html  
    get_adjacency                           html  
    get_algorithms                          html  
    get_bic_net_algorithms-bicluster_net-method
                                            html  
    get_bic_net_algorithms                  html  
    get_biclusters                          html  
    get_louvain_communities-bicluster_net-method
                                            html  
    get_louvain_communities-cooccurrence_net-method
                                            html  
    get_louvain_communities                 html  
    getallBFClusters                        html  
    has_names                               html  
    is_subset_or_identical                  html  
    mouse_data                              html  
    network_edge_strength                   html  
    network_edge_strength_float             html  
    node_size                               html  
    occurance_matrix                        html  
    occurance_table                         html  
    p_overlap                               html  
    p_overlap_2d                            html  
    p_overlap_2d_higher                     html  
    p_overlap_higher                        html  
    plot-bicluster_net-missing-method       html  
    plot-cooccurrence_net-missing-method    html  
    plot_algo_network                       html  
    plot_piechart_bicluster_network         html  
    randomize_matrix                        html  
    replace_threshold                       html  
    replace_values                          html  
    replace_values_float                    html  
    rowhistogram                            html  
    run_akmbiclust                          html  
    run_bimax                               html  
    run_cc                                  html  
    run_fabia                               html  
    run_isa                                 html  
    run_plaid                               html  
    run_qubic                               html  
    run_quest                               html  
    run_spectral                            html  
    run_unibic                              html  
    run_xmotifs                             html  
    sample_biclusters                       html  
    select_biclusters_from_bicluster_network-bicluster_net-list-method
                                            html  
    select_biclusters_from_bicluster_network
                                            html  
    set_bicluster_names-bicluster-matrix-method
                                            html  
    set_bicluster_names                     html  
    similarity_matrix                       html  
    transpose_bicluster                     html  
    validate_bicluster                      html  
    write_graphml                           html  
    write_matrix                            html  
    zero_subsetting                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mosbi)
Making 'packages.html' ... done