##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mosaics.buildbin-libdir && mkdir mosaics.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=mosaics.buildbin-libdir mosaics_2.33.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'mosaics' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c convolution_1S.cpp -o convolution_1S.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c convolution_2S.cpp -o convolution_2S.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c emHMM.cpp -o emHMM.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c stack.cpp -o stack.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c updatePiMat.cpp -o updatePiMat.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c viterbi.cpp -o viterbi.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mosaics.dll tmp.def convolution_1S.o convolution_2S.o emHMM.o stack.o updatePiMat.o viterbi.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/mosaics.buildbin-libdir/00LOCK-mosaics/00new/mosaics/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mosaics'
    finding HTML links ... done
    BinData-class                           html  
    MosaicsFit-class                        html  
    MosaicsFitEst-class                     html  
    MosaicsFitParam-class                   html  
    MosaicsHMM-class                        html  
    MosaicsPeak-class                       html  
    MosaicsPeakParam-class                  html  
    TagData-class                           html  
    adjustBoundary                          html  
    constructBins                           html  
    estimates                               html  
    export                                  html  
    extractReads                            html  
    findSummit                              html  
    fllterPeak                              html  
    generateWig                             html  
    mosaics-internal                        html  
    mosaics-package                         html  
    mosaicsFit                              html  
    mosaicsFitHMM                           html  
    mosaicsPeak                             html  
    mosaicsPeakHMM                          html  
    mosaicsRunAll                           html  
    readBins                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'mosaics' as mosaics_2.33.0.zip
* DONE (mosaics)