############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL mixOmics ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'mixOmics' ... ** using staged installation It is recommended to use 'given' instead of 'middle'. It is recommended to use 'given' instead of 'middle'. ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mixOmics' finding HTML links ... done Koren.16S html S3methods-print html auroc html background.predict html biplot html block.pls html block.plsda html block.spls html block.splsda html breast.TCGA html breast.tumors html cim html cimDiablo html circosPlot html colors html diverse.16S html explained_variance html get.confusion_matrix html image.tune.rcc html imgCor html impute.nipals html ipca html linnerud html liver.toxicity html logratio-transformations html map html mat.rank html mint.block.pls html mint.block.plsda html mint.block.spls html mint.block.splsda html mint.pca html mint.pls html mint.plsda html mint.spls html mint.splsda html mixOmics-package html mixOmics html multidrug html nearZeroVar html network html nipals html nutrimouse html pca html perf html plot.pca html plot.perf html plot.perf.pls html plot.rcc html plot.tune html plotArrow html plotDiablo html plotIndiv html plotLoadings html plotMarkers html plotVar html pls html plsda html predict html rcc html finding level-2 HTML links ... done selectVar html sipca html spca html spls html splsda html srbct html stemcells html study_split html summary html tune html tune.block.splsda html tune.mint.splsda html tune.pca html tune.rcc html tune.spca html tune.spls html tune.splsda html tune.splslevel html unmap html vac18 html vac18.simulated html vip html withinVariation html wrapper.rgcca html wrapper.sgcca html yeast html zz-defunct html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixOmics) Making 'packages.html' ... done