############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf mina.buildbin-libdir && mkdir mina.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=mina.buildbin-libdir mina_1.3.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'mina' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppParallel/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c cp_cor.cpp -o cp_cor.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mina.dll tmp.def RcppExports.o cp_cor.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/mina.buildbin-libdir/00LOCK-mina/00new/mina/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'norm' in package 'mina' ** help *** installing help indices converting help for package 'mina' finding HTML links ... done adj-matrix html adj-mina html adj html adj_accessor html adj_method_list html bs_pm-mina html bs_pm html bs_pm_accessor html check_mina html check_mina_de html check_mina_qu html cls html cls_accessor html cls_tab html cls_tab_accessor html com_dis-matrix html com_dis-mina html com_dis html com_dis_list html com_plot-mina html com_plot html com_r2-mina html com_r2 html cp_cor html data-hmp html data-maize html des_accessor html dis_accessor html dis_stat_accessor html dmr-matrix html dmr-mina html dmr html dmr_accessor html filter_mat html fit_tabs-mina html fit_tabs html get_contrast html get_contrast_grp html get_dis_df html get_ja html get_ja0 html get_ja0_grp html get_ja_grp html get_net_cls_tab-matrix-data.frame-method html get_net_cls_tab html get_r2-mat html get_r2 html get_rep-matrix html get_rep-mima html get_spectra html get_stat html hmp_des html hmp_otu html maize_asv html maize_asv2 html maize_des html maize_des2 html mat_or_NULL-class html mina-class html net_cls-matrix html net_cls-mina html net_cls html net_cls_tab-mina-method html net_cls_tab html net_dis-mina html net_dis html net_dis_accessor html net_dis_indi html net_dis_pcoa html net_dis_plot html net_grp_cmp html net_node_cmp html norm_accessor html norm_by_raref html norm_by_total html norm_tab-matrix html norm_tab-mina html norm_tab html norm_tab_method_list html pcoa_plot html rarefaction_subsample html re_format_AP html re_format_MCL html sim_par html sparcc html tab_accessor html tina-matrix-method html tina html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'mina' as mina_1.3.0.zip * DONE (mina)