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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL mia
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'mia' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mia'
    finding HTML links ... done
    agglomerate-methods                     html  
    calculateDMN                            html  
    calculateDistance                       html  
    calculateJSD                            html  
    calculateOverlap                        html  
    calculateUnifrac                        html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-mia/00new/mia/help/calculateUniFrac.html
    estimateDivergence                      html  
    finding level-2 HTML links ... done

    estimateDiversity                       html  
    estimateDominance                       html  
    estimateEvenness                        html  
    estimateRichness                        html  
    getAbundance                            html  
    getExperimentCrossCorrelation           html  
    getPrevalence                           html  
    isContaminant                           html  
    loadFromMetaphlan                       html  
    loadFromMothur                          html  
    loadFromQIIME2                          html  
    makePhyloseqFromTreeSummarizedExperiment
                                            html  
    makeSummarizedExperimentFromBiom        html  
    makeTreeSummarizedExperimentFromDADA2   html  
    makeTreeSummarizedExperimentFromPhyloseq
                                            html  
    meltAssay                               html  
    merge-methods                           html  
    mia-datasets                            html  
    mia-package                             html  
    perSampleDominantTaxa                   html  
    relabundance                            html  
    runCCA                                  html  
    runDPCoA                                html  
    runNMDS                                 html  
    splitByRanks                            html  
    subsampleCounts                         html  
    subsetSamples                           html  
    summaries                               html  
    taxonomy-methods                        html  
    transformCounts                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mia)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'doppelgangR' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'hipathia' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'MuData' is missing or broken
 done