############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL methylumi ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'methylumi' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'methylumi' finding HTML links ... done CpGs html IDATsToMatrices html IDATtoMatrix html MethyLumi-class html finding level-2 HTML links ... done MethyLumiM-class html MethyLumiQC-class html MethyLumiSet-class html estimateM html extractBarcodeAndPosition html featureFilter html generics html getAssayDataNameSubstitutions html methylData-class html methylumIDAT html methylumi-package html methylumiGenerics html methylumiR html mldat html normalizeMethyLumiSet html plotSampleIntensities html qcplot html stripBeadExtras html tcgaPipeline html varFilter html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (methylumi) Making 'packages.html' ... done