############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL methrix ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'methrix' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'methrix' finding HTML links ... done combine_methrix html convert_HDF5_methrix html convert_methrix html coverage_filter html extract_CPGs html get_matrix html get_region_summary html finding level-2 HTML links ... done get_stats html load_HDF5_methrix html mask_methrix html methrix-class html methrix2bsseq html methrix_data html methrix_pca html methrix_report html order_by_sd html plot_coverage html plot_density html plot_pca html plot_stats html plot_violin html read_bedgraphs html region_filter html remove_snps html remove_uncovered html save_HDF5_methrix html subset_methrix html write_bedgraphs html write_bigwigs html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (methrix) Making 'packages.html' ... done