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This page was generated on 2022-05-18 12:05:44 -0400 (Wed, 18 May 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4379
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4154
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4220
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for metavizr on nebbiolo1


To the developers/maintainers of the metavizr package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metavizr.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1137/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metavizr 1.20.0  (landing page)
Hector Corrada Bravo
Snapshot Date: 2022-05-17 13:55:01 -0400 (Tue, 17 May 2022)
git_url: https://git.bioconductor.org/packages/metavizr
git_branch: RELEASE_3_15
git_last_commit: 596a30e
git_last_commit_date: 2022-04-26 11:40:36 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: metavizr
Version: 1.20.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data metavizr
StartedAt: 2022-05-17 16:54:46 -0400 (Tue, 17 May 2022)
EndedAt: 2022-05-17 16:55:51 -0400 (Tue, 17 May 2022)
EllapsedTime: 65.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data metavizr
###
##############################################################################
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* checking for file ‘metavizr/DESCRIPTION’ ... OK
* preparing ‘metavizr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘IntroToMetavizr.Rmd’ using rmarkdown
Loading required package: metavizr
Loading required package: metagenomeSeq
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: glmnet
Loading required package: Matrix
Loaded glmnet 4.1-4
Loading required package: RColorBrewer
Loading required package: data.table
Loading required package: digest
Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData'
Loading required package: msd16s
Quitting from lines 95-124 (IntroToMetavizr.Rmd) 
Error: processing vignette 'IntroToMetavizr.Rmd' failed with diagnostics:
row dimension of design doesn't match column dimension of data object
--- failed re-building ‘IntroToMetavizr.Rmd’

SUMMARY: processing the following file failed:
  ‘IntroToMetavizr.Rmd’

Error: Vignette re-building failed.
Execution halted