############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL metaseqR2 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘metaseqR2’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c pval.c -o pval.o pval.c: In function ‘add_from_both_sides’: pval.c:26:11: warning: unused variable ‘esttotalperlength’ [-Wunused-variable] 26 | double esttotalperlength = total/2; | ^~~~~~~~~~~~~~~~~ gcc -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o metaseqR2.so pval.o -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.15-bioc/R/library/00LOCK-metaseqR2/00new/metaseqR2/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘metaseqR2’ Warning: replacing previous import ‘matrixStats::rowMedians’ by ‘Biobase::rowMedians’ when loading ‘DSS’ Warning: replacing previous import ‘matrixStats::anyMissing’ by ‘Biobase::anyMissing’ when loading ‘DSS’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘metaseqR2’ Warning: replacing previous import ‘matrixStats::rowMedians’ by ‘Biobase::rowMedians’ when loading ‘DSS’ Warning: replacing previous import ‘matrixStats::anyMissing’ by ‘Biobase::anyMissing’ when loading ‘DSS’ ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘metaseqR2’ Warning: replacing previous import ‘matrixStats::rowMedians’ by ‘Biobase::rowMedians’ when loading ‘DSS’ Warning: replacing previous import ‘matrixStats::anyMissing’ by ‘Biobase::anyMissing’ when loading ‘DSS’ ** testing if installed package keeps a record of temporary installation path * DONE (metaseqR2)