############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL marr ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'marr' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c marrUtility.cpp -o marrUtility.o marrUtility.cpp: In function 'Rcpp::NumericVector getSS(Rcpp::NumericVector)': marrUtility.cpp:75:7: warning: variable 'i' set but not used [-Wunused-but-set-variable] int i=0; ^ C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o marr.dll tmp.def RcppExports.o marrUtility.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-marr/00new/marr/libs/x64 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'marr' finding HTML links ... done Marr-class html Marr html MarrAlpha html MarrData html MarrFeatureVars html MarrFeatures html MarrFeaturesfiltered html MarrFilterData html MarrPFeatures html MarrPSamplepairs html MarrPlotFeatures html MarrPlotSamplepairs html MarrProc html MarrSamplepairs html MarrSamplepairsfiltered html data.frameORSummarizedExperiment-class html msprepCOPD html vectorORNull-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (marr) Making 'packages.html' ... done