############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=makecdfenv.buildbin-libdir makecdfenv_1.71.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'makecdfenv' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include" -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c read_cdffile.c -o read_cdffile.o read_cdffile.c: In function 'readQC': read_cdffile.c:576:7: warning: variable 'typeQC' set but not used [-Wunused-but-set-variable] int typeQC; ^~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o makecdfenv.dll tmp.def read_cdffile.o -LD:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/makecdfenv.buildbin-libdir/00LOCK-makecdfenv/00new/makecdfenv/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'makecdfenv' finding HTML links ... done Cdf-class html getInfoInAffyFile html make.cdf.env html make.cdf.package html pmormm html read.cdffile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'makecdfenv' as makecdfenv_1.71.0.zip * DONE (makecdfenv)