############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL inveRsion ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘inveRsion’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c init_inveRsion.c -o init_inveRsion.o gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c inversionModel.c -o inversionModel.o inversionModel.c: In function ‘blockAndLev’: inversionModel.c:185:31: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 185 | if(dat[(*nr)*(c1)+row]==levelleft[level] & dat[(*nr)*(c2)+row]==levelright[level]) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ inversionModel.c: In function ‘inversionModel’: inversionModel.c:360:15: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 360 | while(steps<*maxSteps & tol>mintol) | ~~~~~^~~~~~~~~~ gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c writeGenoDat.c -o writeGenoDat.o writeGenoDat.c: In function ‘writeGenoDat’: writeGenoDat.c:34:16: warning: ‘dat’ may be used uninitialized in this function [-Wmaybe-uninitialized] 34 | int i,j,l,k,dat,nomiss[*numlevcaco],sum[*numlevcaco]; | ^~~ gcc -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o inveRsion.so init_inveRsion.o inversionModel.o writeGenoDat.o -L/home/biocbuild/bbs-3.15-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.15-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.15-bioc/R/library/00LOCK-inveRsion/00new/inveRsion/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inveRsion)