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This page was generated on 2022-05-23 12:07:59 -0400 (Mon, 23 May 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4155
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for illuminaio on merida1


To the developers/maintainers of the illuminaio package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/illuminaio.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 944/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
illuminaio 0.38.0  (landing page)
Kasper Daniel Hansen
Snapshot Date: 2022-05-22 13:55:15 -0400 (Sun, 22 May 2022)
git_url: https://git.bioconductor.org/packages/illuminaio
git_branch: RELEASE_3_15
git_last_commit: b16231b
git_last_commit_date: 2022-04-26 16:56:35 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: illuminaio
Version: 0.38.0
Command: rm -rf illuminaio.buildbin-libdir && mkdir illuminaio.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh illuminaio_0.38.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R illuminaio.buildbin-libdir
StartedAt: 2022-05-23 10:20:25 -0400 (Mon, 23 May 2022)
EndedAt: 2022-05-23 10:20:31 -0400 (Mon, 23 May 2022)
EllapsedTime: 6.3 seconds
RetCode: 0
Status:   OK  
PackageFile: illuminaio_0.38.0.tgz
PackageFileSize: 368.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf illuminaio.buildbin-libdir && mkdir illuminaio.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh illuminaio_0.38.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R illuminaio.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=illuminaio.buildbin-libdir illuminaio_0.38.0.tar.gz'
>>>>>>> 

* installing *source* package ‘illuminaio’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c 000.init.c -o 000.init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c des.c -o des.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c local_des.c -o local_des.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o illuminaio.so 000.init.o des.o local_des.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/illuminaio.buildbin-libdir/00LOCK-illuminaio/00new/illuminaio/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (illuminaio)


>>>>>>> 
>>>>>>> FIXING LINKS FOR illuminaio.buildbin-libdir/illuminaio/libs/illuminaio.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "illuminaio.buildbin-libdir/illuminaio/libs/illuminaio.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "illuminaio.buildbin-libdir/illuminaio/libs/illuminaio.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "illuminaio.buildbin-libdir/illuminaio/libs/illuminaio.so"