############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL igvR ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'igvR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading See system.file("LICENSE", package="MotifDb") for use restrictions. ** help *** installing help indices converting help for package 'igvR' finding HTML links ... done BedpeInteractionsTrack-class html DataFrameAnnotationTrack-class html DataFrameQuantitativeTrack-class html GFF3Track-class html GRangesAnnotationTrack-class html GRangesQuantitativeTrack-class html GWASTrack-class html GenomicAlignmentTrack-class html QuantitativeTrack-class html RemoteAlignmentTrack-class html Track-class html UCSCBedAnnotationTrack-class html UCSCBedGraphQuantitativeTrack-class html VariantTrack-class html displayTrack html enableMotifLogoPopups html getGenomicRegion html getSupportedGenomes html getTrackNames html igvAnnotationTrack-class html igvR-class html ping html removeTracksByName html saveToSVG html setCustomGenome html setGenome html setTrackClickFunction html setTrackHeight html showGenomicRegion html showTrackLabels html trackInfo html trackSize-BedpeInteractionsTrack-method html trackSize-DataFrameAnnotationTrack-method html trackSize-DataFrameQuantitativeTrack-method html trackSize-GFF3Track-method html trackSize-GRangesAnnotationTrack-method html trackSize-GRangesQuantitativeTrack-method html trackSize-GWASTrack-method html trackSize-GenomicAlignmentTrack-method html trackSize-UCSCBedAnnotationTrack-method html trackSize-UCSCBedGraphQuantitativeTrack-method html trackSize-VariantTrack-method html trackSize html zoomIn html zoomOut html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location See system.file("LICENSE", package="MotifDb") for use restrictions. ** testing if installed package can be loaded from final location See system.file("LICENSE", package="MotifDb") for use restrictions. ** testing if installed package keeps a record of temporary installation path * DONE (igvR) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'GenVisR' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'SplicingGraphs' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'strandCheckR' is missing or broken done