##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf icetea.buildbin-libdir && mkdir icetea.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=icetea.buildbin-libdir icetea_1.13.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'icetea' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'icetea'
    finding HTML links ... done
    activeChrs                              html  
    annotateTSS                             html  
    check_capSet                            html  
    demultiplexFASTQ                        html  
    detectDiffTSS                           html  
    finding level-2 HTML links ... done

    detectTSS                               html  
    diffQCplots                             html  
    exampleCSobject                         html  
    exportTSS                               html  
    filterDuplicates                        html  
    filterDups                              html  
    fitDiffTSS                              html  
    getBamFlags                             html  
    getChromBins                            html  
    getChromWindows                         html  
    getGeneCounts                           html  
    getMCparams                             html  
    getNormFactors                          html  
    get_newfastq                            html  
    getranks                                html  
    mapCaps                                 html  
    newCapSet                               html  
    numReadsInBed                           html  
    plotPrecision                           html  
    plotReadStats                           html  
    plotTSSprecision                        html  
    readsTo3p                               html  
    readsTo5p                               html  
    readsToCenter                           html  
    sampleInfo                              html  
    splitBAM_byIndex                        html  
    splitBAM_byRepindex                     html  
    split_fastq                             html  
    splitranks                              html  
    strandBinCounts                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'icetea' as icetea_1.13.1.zip
* DONE (icetea)