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This page was generated on 2022-03-18 11:07:46 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for hummingbird on riesling1


To the developers/maintainers of the hummingbird package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hummingbird.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 895/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hummingbird 1.5.0  (landing page)
Eleni Adam
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/hummingbird
git_branch: master
git_last_commit: 9e46d09
git_last_commit_date: 2021-10-26 13:01:37 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: hummingbird
Version: 1.5.0
Command: rm -rf hummingbird.buildbin-libdir && mkdir hummingbird.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=hummingbird.buildbin-libdir hummingbird_1.5.0.tar.gz
StartedAt: 2022-03-17 21:14:44 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:15:55 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 71.4 seconds
RetCode: 0
Status:   OK  
PackageFile: hummingbird_1.5.0.zip
PackageFileSize: 787.2 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf hummingbird.buildbin-libdir && mkdir hummingbird.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=hummingbird.buildbin-libdir hummingbird_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'hummingbird' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c em.cpp -o em.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c init.cpp -o init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c postAdjustment.cpp -o postAdjustment.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o hummingbird.dll tmp.def RcppExports.o em.o init.o postAdjustment.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/hummingbird.buildbin-libdir/00LOCK-hummingbird/00new/hummingbird/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'hummingbird'
    finding HTML links ... done
    abnormM                                 html  
    abnormUM                                html  
    exampleHummingbird                      html  
    exampleSECase                           html  
    exampleSEControl                        html  
    hummingbird-package                     html  
    hummingbirdEM                           html  
    hummingbirdEMinternal                   html  
    hummingbirdGraph                        html  
    hummingbirdPostAdjustment               html  
    hummingbirdPostAdjustmentInternal       html  
    normM                                   html  
    normUM                                  html  
    pos                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'hummingbird' as hummingbird_1.5.0.zip
* DONE (hummingbird)