############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf graphite.buildbin-libdir && mkdir graphite.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=graphite.buildbin-libdir graphite_1.41.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'graphite' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'graphite' finding HTML links ... done Pathway-class html PathwayList-class html Pathways-class html as.list.PathwayList html buildPathway html convertIdentifiers html cytoscapePlot html finding level-2 HTML links ... done pathwayDatabases html pathwayGraph html pathways html prepareSPIA html runClipper html runSPIA html runTopologyGSA html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'graphite' as graphite_1.41.0.zip * DONE (graphite)