############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf girafe.buildbin-libdir && mkdir girafe.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=girafe.buildbin-libdir girafe_1.48.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'girafe' ... ** using staged installation ** libs g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c coverage.cpp -o coverage.o gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c girafe_init.c -o girafe_init.o g++ -std=gnu++11 -shared -s -static-libgcc -o girafe.dll tmp.def coverage.o girafe_init.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.15-bioc/meat/girafe.buildbin-libdir/00LOCK-girafe/00new/girafe/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe' Creating a generic function for 'sample' from package 'base' in package 'girafe' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe' ** testing if installed package can be loaded from final location No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe' ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'girafe' as girafe_1.48.0.zip * DONE (girafe)