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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ggtree
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'ggtree' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ggtree'
    finding HTML links ... done
    Date2decimal                            html  
    add_TREEINFO                            html  
    add_colorbar                            html  
    applyLayoutDaylight                     html  
    as.polytomy                             html  
    attacher                                html  
    collapse                                html  
    decimal2Date                            html  
    expand                                  html  
    facet-plot                              html  
    facet_data                              html  
    facet_labeller                          html  
    facet_widths                            html  
    flip                                    html  
    geom-hilight                            html  
    geom_aline                              html  
    geom_balance                            html  
    geom_cladelab                           html  
    geom_cladelabel                         html  
    geom_cladelabel2                        html  
    geom_label2                             html  
    geom_motif                              html  
    geom_nodelab                            html  
    geom_nodelab2                           html  
    geom_nodepoint                          html  
    geom_point2                             html  
    geom_range                              html  
    geom_rootedge                           html  
    geom_rootpoint                          html  
    geom_segment2                           html  
    geom_strip                              html  
    geom_taxalink                           html  
    geom_text2                              html  
    geom_tiplab                             html  
    geom_tiplab2                            html  
    geom_tippoint                           html  
    geom_tree                               html  
    geom_tree2                              html  
    geom_treescale                          html  
    geom_zoom_clade                         html  
    get.path                                html  
    getNodeAngle.df                         html  
    getNodesBreadthFirst.df                 html  
    getSubtree                              html  
    getSubtree.df                           html  
    getSubtreeUnrooted                      html  
    getSubtreeUnrooted.df                   html  
    getTreeArcAngles                        html  
    get_clade_position                      html  
    get_heatmap_column_position             html  
    get_taxa_name                           html  
    ggdensitree                             html  
    ggexpand                                html  
    ggtree-format-painter                   html  
    ggtree-ggproto                          html  
    ggtree                                  html  
    gheatmap                                html  
    gzoom-methods                           html  
    gzoom.phylo                             html  
    identify                                html  
    inset                                   html  
    label_pad                               html  
    layoutDaylight                          html  
    layoutEqualAngle                        html  
    msaplot                                 html  
    multiplot                               html  
    nodebar                                 html  
    nodepie                                 html  
    open_tree                               html  
    range_format                            html  
    reexports                               html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-ggtree/00new/ggtree/help/collapse.html
    revts                                   html  
    rotate                                  html  
    rotateTreePoints                        html  
    rotate_tree                             html  
    scale-color-subtree                     html  
    scaleClade                              html  
    scale_color-methods                     html  
    scale_x_ggtree                          html  
    scale_x_range                           html  
    set_hilight_legend                      html  
    td_filter                               html  
    td_mutate                               html  
    td_unnest                               html  
    theme_dendrogram                        html  
    theme_inset                             html  
    theme_tree                              html  
    theme_tree2                             html  
    tree-layout                             html  
    viewClade                               html  
    xlim_expand                             html  
    xlim_tree                               html  
    zoomClade                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggtree)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SRAdb' is missing or broken
 done