############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gep2pep.buildbin-libdir && mkdir gep2pep.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=gep2pep.buildbin-libdir gep2pep_1.15.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'gep2pep' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gep2pep' finding HTML links ... done CategorizedCollection-class html CategorizedCollection html CondSEA html PathSEA html addSingleGeneSets html as.CategorizedCollection html buildPEPs html checkRepository html clearCache html createMergedRepository html createRepository html exportSEA html gene2pathways html gep2pep-package html getCollections html getDetails html getResults html importFromRawMode html importMSigDB.xml html loadCollection html loadESmatrix html loadPVmatrix html loadSampleGEP html loadSamplePWS html makeCollectionIDs html openRepository html setId2setName html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'gep2pep' as gep2pep_1.15.0.zip * DONE (gep2pep)