Benjamin Haibe-Kains
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/genefu |
| git_branch: master |
| git_last_commit: a614a0d |
| git_last_commit_date: 2021-10-26 11:58:39 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:35 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the genefu package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genefu.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 725/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| genefu 2.27.0 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: genefu |
| Version: 2.27.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:genefu.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings genefu_2.27.0.tar.gz |
| StartedAt: 2022-03-17 19:09:39 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:12:08 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 148.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: genefu.Rcheck |
| Warnings: 0 |
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:genefu.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings genefu_2.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/genefu.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genefu/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genefu' version '2.27.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'genefu' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 4.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'AIMS' 'biomaRt' 'iC10'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
'mclust:::grid1' 'mclust:::grid2'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbuild/bbs-3.15-bioc/meat/genefu.Rcheck/00check.log'
for details.
genefu.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL genefu
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'genefu' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'genefu'
finding HTML links ... done
bimod html
boxplotplus2 html
claudinLow html
claudinLowData html
collapseIDs html
compareProtoCor html
compute.pairw.cor.meta html
compute.pairw.cor.z html
compute.proto.cor.meta html
cordiff.dep html
endoPredict html
expos html
fuzzy.ttest html
gene70 html
gene76 html
geneid.map html
genius html
ggi html
ihc4 html
intrinsic.cluster html
intrinsic.cluster.predict html
map.datasets html
medianCtr html
mod1 html
mod2 html
modelOvcAngiogenic html
molecular.subtyping html
nkis html
npi html
oncotypedx html
ovcAngiogenic html
ovcCrijns html
ovcTCGA html
ovcYoshihara html
overlapSets html
pam50 html
pik3cags html
power.cor html
ps.cluster html
read.m.file html
readArray html
rename.duplicate html
rescale html
rorS html
scmgene.robust html
scmod1.robust html
scmod2.robust html
setcolclass.df html
sig.endoPredict html
sig.gene70 html
sig.gene76 html
sig.genius html
sig.ggi html
sig.oncotypedx html
sig.pik3cags html
sig.score html
sig.tamr13 html
sigOvcAngiogenic html
sigOvcCrijns html
sigOvcSpentzos html
sigOvcTCGA html
sigOvcYoshihara html
spearmanCI html
ssp2003 html
ssp2006 html
st.gallen html
stab.fs html
stab.fs.ranking html
strescR html
subtype.cluster html
subtype.cluster.predict html
tamr13 html
tbrm html
vdxs html
weighted.meanvar html
write.m.file html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genefu)
Making 'packages.html' ... done
genefu.Rcheck/genefu-Ex.timings
| name | user | system | elapsed | |
| bimod | 0.27 | 0.00 | 0.27 | |
| boxplotplus2 | 0 | 0 | 0 | |
| claudinLow | 0.83 | 0.02 | 0.85 | |
| compareProtoCor | 0.87 | 0.04 | 0.92 | |
| compute.pairw.cor.meta | 1.16 | 0.05 | 1.20 | |
| compute.proto.cor.meta | 0.89 | 0.00 | 0.89 | |
| cordiff.dep | 0.08 | 0.00 | 0.08 | |
| endoPredict | 0.08 | 0.02 | 0.09 | |
| fuzzy.ttest | 0.08 | 0.03 | 0.11 | |
| gene70 | 0.18 | 0.03 | 0.22 | |
| gene76 | 0.14 | 0.01 | 0.16 | |
| geneid.map | 0.10 | 0.00 | 0.09 | |
| genius | 0.17 | 0.05 | 0.22 | |
| ggi | 0.08 | 0.02 | 0.09 | |
| ihc4 | 0.06 | 0.01 | 0.08 | |
| intrinsic.cluster | 0.23 | 0.05 | 0.28 | |
| intrinsic.cluster.predict | 0.11 | 0.03 | 0.14 | |
| map.datasets | 0.87 | 0.03 | 0.91 | |
| molecular.subtyping | 1.66 | 0.08 | 1.81 | |
| npi | 0.08 | 0.02 | 0.09 | |
| oncotypedx | 0.16 | 0.00 | 0.16 | |
| ovcAngiogenic | 0.12 | 0.04 | 0.17 | |
| ovcCrijns | 0.14 | 0.02 | 0.16 | |
| ovcTCGA | 0.30 | 0.00 | 0.29 | |
| ovcYoshihara | 0.12 | 0.01 | 0.14 | |
| pik3cags | 0.14 | 0.02 | 0.16 | |
| power.cor | 0 | 0 | 0 | |
| ps.cluster | 0.46 | 0.00 | 0.45 | |
| read.m.file | 0.04 | 0.00 | 0.05 | |
| rename.duplicate | 0 | 0 | 0 | |
| rescale | 0.19 | 0.03 | 0.22 | |
| rorS | 0.13 | 0.02 | 0.14 | |
| setcolclass.df | 0 | 0 | 0 | |
| sig.score | 0.07 | 0.03 | 0.11 | |
| spearmanCI | 0 | 0 | 0 | |
| st.gallen | 0.08 | 0.01 | 0.09 | |
| stab.fs | 0.08 | 0.00 | 0.08 | |
| stab.fs.ranking | 0.45 | 0.03 | 0.49 | |
| strescR | 0 | 0 | 0 | |
| subtype.cluster | 0.53 | 0.07 | 0.59 | |
| subtype.cluster.predict | 0.21 | 0.03 | 0.23 | |
| tamr13 | 0.19 | 0.00 | 0.19 | |
| tbrm | 0 | 0 | 0 | |
| weighted.meanvar | 0 | 0 | 0 | |
| write.m.file | 0.01 | 0.00 | 0.02 | |