Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-05-23 12:07:52 -0400 (Mon, 23 May 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 (2022-04-22) -- "Vigorous Calisthenics" | 4380 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" | 4155 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.0 (2022-04-22) -- "Vigorous Calisthenics" | 4221 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the genefu package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genefu.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 744/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
genefu 2.28.0 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: genefu |
Version: 2.28.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:genefu.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings genefu_2.28.0.tar.gz |
StartedAt: 2022-05-23 02:33:36 -0400 (Mon, 23 May 2022) |
EndedAt: 2022-05-23 02:38:45 -0400 (Mon, 23 May 2022) |
EllapsedTime: 309.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: genefu.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:genefu.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings genefu_2.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/genefu.Rcheck’ * using R version 4.2.0 (2022-04-22) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘genefu/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘genefu’ version ‘2.28.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘genefu’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.2Mb sub-directories of 1Mb or more: data 4.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘AIMS’ ‘biomaRt’ ‘iC10’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. Unexported objects imported by ':::' calls: ‘mclust:::grid1’ ‘mclust:::grid2’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.15-bioc/meat/genefu.Rcheck/00check.log’ for details.
genefu.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL genefu ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘genefu’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genefu)
genefu.Rcheck/genefu-Ex.timings
name | user | system | elapsed | |
bimod | 0.372 | 0.019 | 0.392 | |
boxplotplus2 | 0.013 | 0.001 | 0.014 | |
claudinLow | 1.940 | 0.022 | 1.971 | |
compareProtoCor | 1.507 | 0.020 | 1.532 | |
compute.pairw.cor.meta | 2.117 | 0.029 | 2.149 | |
compute.proto.cor.meta | 1.442 | 0.014 | 1.458 | |
cordiff.dep | 0.162 | 0.004 | 0.166 | |
endoPredict | 0.178 | 0.006 | 0.184 | |
fuzzy.ttest | 0.257 | 0.020 | 0.278 | |
gene70 | 0.419 | 0.011 | 0.431 | |
gene76 | 0.206 | 0.007 | 0.214 | |
geneid.map | 0.19 | 0.01 | 0.20 | |
genius | 0.371 | 0.018 | 0.389 | |
ggi | 0.198 | 0.010 | 0.208 | |
ihc4 | 0.200 | 0.009 | 0.210 | |
intrinsic.cluster | 0.685 | 0.017 | 0.677 | |
intrinsic.cluster.predict | 0.331 | 0.009 | 0.341 | |
map.datasets | 1.463 | 0.021 | 1.484 | |
molecular.subtyping | 4.314 | 0.131 | 4.454 | |
npi | 0.165 | 0.006 | 0.172 | |
oncotypedx | 0.205 | 0.007 | 0.211 | |
ovcAngiogenic | 0.207 | 0.010 | 0.218 | |
ovcCrijns | 0.202 | 0.008 | 0.210 | |
ovcTCGA | 0.444 | 0.007 | 0.452 | |
ovcYoshihara | 0.232 | 0.011 | 0.243 | |
pik3cags | 0.196 | 0.008 | 0.204 | |
power.cor | 0.001 | 0.000 | 0.001 | |
ps.cluster | 0.693 | 0.015 | 0.678 | |
read.m.file | 0.068 | 0.007 | 0.075 | |
rename.duplicate | 0.002 | 0.000 | 0.002 | |
rescale | 0.390 | 0.008 | 0.399 | |
rorS | 0.319 | 0.008 | 0.327 | |
setcolclass.df | 0.002 | 0.001 | 0.002 | |
sig.score | 0.206 | 0.006 | 0.213 | |
spearmanCI | 0.001 | 0.000 | 0.001 | |
st.gallen | 0.168 | 0.005 | 0.173 | |
stab.fs | 0.222 | 0.005 | 0.227 | |
stab.fs.ranking | 1.519 | 0.050 | 1.571 | |
strescR | 0.001 | 0.000 | 0.001 | |
subtype.cluster | 1.093 | 0.050 | 1.145 | |
subtype.cluster.predict | 0.484 | 0.019 | 0.505 | |
tamr13 | 0.232 | 0.011 | 0.243 | |
tbrm | 0.001 | 0.000 | 0.001 | |
weighted.meanvar | 0.001 | 0.000 | 0.001 | |
write.m.file | 0.006 | 0.003 | 0.009 | |