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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL gaia
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'gaia' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gaia'
    finding HTML links ... done
    crc                                     html  
    crc_markers                             html  
    gaia-package                            html  
    generate_approx_null_hypothesis         html  
    generate_null_hypothesis                html  
    load_cnv                                html  
    load_markers                            html  
    peel_off                                html  
    qvalue                                  html  
    runGAIA                                 html  
    search_peaks_in_regions                 html  
    synthCNV_Matrix                         html  
    synthMarkers_Matrix                     html  
    write_significant_regions               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gaia)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'matchBox' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'MeasurementError.cor' is missing or broken
 done