############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r flowUtils -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data flowUtils ### ############################################################################## ############################################################################## * checking for file 'flowUtils/DESCRIPTION' ... OK * preparing 'flowUtils': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'HowTo-flowUtils.Rnw' using Sweave No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils' Error: processing vignette 'HowTo-flowUtils.Rnw' failed with diagnostics: chunk 9 (label = ApplyGatingML1) Error in if (class(mySpill) != "matrix") mySpill <- parseMatrixFromString(mySpill, : the condition has length > 1 --- failed re-building 'HowTo-flowUtils.Rnw' SUMMARY: processing the following file failed: 'HowTo-flowUtils.Rnw' Error: Vignette re-building failed. Execution halted