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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL fastseg
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'fastseg' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c R_init_fastseg.c -o R_init_fastseg.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c segment.cpp -o segment.o
segment.cpp: In function 'SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segment.cpp:60:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^~~~~~~~
segment.cpp:61:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic, meanLeft,meanRight,varLeft,varRight;
         ^~~~~~~~~~~~
segment.cpp:62:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^~~~~~~~~~~~
segment.cpp:63:40: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable]
  double newPValue, maxPValue,oldPValue,maxIdx;
                                        ^~~~~~
In file included from segment.cpp:10:
D:/biocbuild/bbs-3.15-bioc/R/include/Rmath.h:209:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^~~~~~~
segment.cpp:65:9: note: in expansion of macro 'beta'
  double beta,nn;
         ^~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp: In function 'SEXPREC* segmentCyberT(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segmentCyberT.cpp:59:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^~~~~~~~
segmentCyberT.cpp:60:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic,meanLeft,meanRight,varLeft,varRight;
         ^~~~~~~~~~~~
segmentCyberT.cpp:61:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^~~~~~~~~~~~
In file included from segmentCyberT.cpp:10:
D:/biocbuild/bbs-3.15-bioc/R/include/Rmath.h:209:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^~~~~~~
segmentCyberT.cpp:63:50: note: in expansion of macro 'beta'
  double newStatisticBptLeft,newStatisticBptRight,beta,nn;
                                                  ^~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o fastseg.dll tmp.def R_init_fastseg.o segment.o segmentCyberT.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-fastseg/00new/fastseg/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fastseg'
    finding HTML links ... done
    coriell                                 html  
    fastseg                                 html  
    fastsegData                             html  
    segPlot                                 html  
    toDNAcopyObj                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastseg)
Making 'packages.html' ... done