Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:07:29 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for exomePeak2 on riesling1


To the developers/maintainers of the exomePeak2 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/exomePeak2.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 617/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
exomePeak2 1.7.1  (landing page)
Zhen Wei
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/exomePeak2
git_branch: master
git_last_commit: 5d8ded6
git_last_commit_date: 2021-11-20 04:00:53 -0400 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: exomePeak2
Version: 1.7.1
Command: rm -rf exomePeak2.buildbin-libdir && mkdir exomePeak2.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=exomePeak2.buildbin-libdir exomePeak2_1.7.1.tar.gz
StartedAt: 2022-03-17 21:07:31 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:08:36 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 65.0 seconds
RetCode: 0
Status:   OK  
PackageFile: exomePeak2_1.7.1.zip
PackageFileSize: 2.685 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf exomePeak2.buildbin-libdir && mkdir exomePeak2.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=exomePeak2.buildbin-libdir exomePeak2_1.7.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'exomePeak2' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'exomePeak2'
    finding HTML links ... done
    GC_content_over_grl                     html  
    GCsizeFactors-methods                   html  
    GLM_inference                           html  
    LibraryType-methods                     html  
    MeripBamFileList-class                  html  
    finding level-2 HTML links ... done

    Parameter-methods                       html  
    Results-methods                         html  
    SummarizedExomePeak-class               html  
    call_peaks_with_GLM                     html  
    convertTxDb                             html  
    ctest                                   html  
    decision_deseq2                         html  
    disj_background                         html  
    estimateSeqDepth-methods                html  
    exomePeak2                              html  
    exomePeak2Results-methods               html  
    exomePeakCalling-methods                html  
    exome_bins_from_txdb                    html  
    exonPlot                                html  
    exons_by_unique_gene                    html  
    exportResults-methods                   html  
    flank_on_exons                          html  
    glmDM-methods                           html  
    glmM-methods                            html  
    mclust_bg                               html  
    normalizeGC-methods                     html  
    plotExonLength-methods                  html  
    plotLfcGC-methods                       html  
    plotReadsGC-methods                     html  
    plotSizeFactors-methods                 html  
    quiet                                   html  
    reads_five_POS                          html  
    reads_five_POS_rev                      html  
    reduce_peaks                            html  
    remove_introns                          html  
    replace_bg                              html  
    scanMeripBAM                            html  
    sort_sep                                html  
    split_by_name                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'exomePeak2' as exomePeak2_1.7.1.zip
* DONE (exomePeak2)