############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf exomeCopy.buildbin-libdir && mkdir exomeCopy.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=exomeCopy.buildbin-libdir exomeCopy_1.41.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'exomeCopy' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c exomeCopy.c -o exomeCopy.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o exomeCopy.dll tmp.def exomeCopy.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/exomeCopy.buildbin-libdir/00LOCK-exomeCopy/00new/exomeCopy/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'exomeCopy' finding HTML links ... done ExomeCopy-class html compileCopyCountSegments html copyCountSegments html countBamInGRanges html finding level-2 HTML links ... done exomeCopy-package html exomeCopy html exomecounts html generateBackground html getGCcontent html negLogLike html plot.exomeCopyObject html plotCompiledCNV html subdivideGRanges html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'exomeCopy' as exomeCopy_1.41.1.zip * DONE (exomeCopy)