############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ensembldb ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'ensembldb' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ensembldb' finding HTML links ... done Deprecated html EnsDb-AnnotationDbi html EnsDb-class html EnsDb-exonsBy html finding level-2 HTML links ... done EnsDb-lengths html EnsDb-seqlevels html EnsDb-sequences html EnsDb-utils html EnsDb html Filter-classes html ProteinFunctionality html cdsToTranscript html convertFilter html genomeToProtein html genomeToTranscript html global-filters html hasProteinData-EnsDb-method html listEnsDbs html makeEnsemblDbPackage html proteinToGenome html proteinToTranscript html runEnsDbApp html transcriptToCds html transcriptToGenome html transcriptToProtein html useMySQL-EnsDb-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ensembldb) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'TitanCNA' is missing or broken done