############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=edge.buildbin-libdir edge_2.28.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'edge' ... ** using staged installation ** libs gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c edge-init.c -o edge-init.o gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c edgeKLODP.c -o edgeKLODP.o edgeKLODP.c: In function 'odpScoreCluster': edgeKLODP.c:194:27: warning: 'middle' may be used uninitialized in this function [-Wmaybe-uninitialized] 194 | free((FREE_ARG) (v + nl - NR_END)); | ~~~~~~~~^~~~~~~~~ edgeKLODP.c:11:19: note: 'middle' was declared here 11 | double *first, *middle; | ^~~~~~ gcc -shared -s -static-libgcc -o edge.dll tmp.def edge-init.o edgeKLODP.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.15-bioc/meat/edge.buildbin-libdir/00LOCK-edge/00new/edge/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'edge' as edge_2.28.1.zip * DONE (edge)